Head to Head
| Africa Cup of Nations Qualification | 2024/10/11 16:00 | Uganda v South Sudan | L | 1-0 |
| Africa Cup of Nations Qualification | 2020/11/16 13:00 | South Sudan v Uganda | W | 1-0 |
| Africa Cup of Nations Qualification | 2020/11/12 13:00 | Uganda v South Sudan | L | 1-0 |
| CECAFA Cup | 2017/12/08 12:00 | Uganda v South Sudan | L | 5-1 |
| African Nations C'ship Qualifying | 2017/07/22 13:00 | Uganda v South Sudan | L | 5-1 |