RNY FC

Rochester Raging Rhinos was founded in 1996 and played in the now-defunct original A-League until it merged with the USISL for the 1997 season, creating the new A-League. After reaching the championship game in 1996 they won their first league championship in 1998.

In 1999 the club made it to the final of the U.S. Open Cup, where they defeated MLS club Colorado Rapids 2–0, becoming the first team from outside MLS to win the national cup since MLS's inception. This win was followed by two further A-League titles in 2000 and 2001.

A year after the A-League's renaming to the USL First Division in 2005, the Rhinos moved into the newly completed PAETEC Park, a 13,768-seat soccer-specific stadium now known as Rochester Community Sports Complex Stadium, and again made the championship game. The Rhinos were considered a candidate to be an MLS expansion team when PAETEC Park was in the planning stages.

The team was declared insolvent in 2008 after defaulting on their stadium agreement, and PAETEC Park was seized by the city of Rochester. After a brief search for a new owner and investor who could improve the team's financial outlook, in March 2008 the club was taken over by Utica businessman Rob Clark. Clark changed the team's name to the "Rochester Rhinos," and assured that the financial situation of the team was stable and it would be able to play the next year. After two seasons under Clark the club joined the new NASL for its 2010 season. The United States Soccer Federation refused the NASL's application for sanctioning, and instead operated its own temporary second-division league for 2010. The Rhinos were part of that temporary USSF Division 2 Professional League. The Rhinos switched leagues again before the 2011 season to the then third-division USL Pro league, who considered themselves equally competitive with the second-division NASL.

The 2011 season ended with the Rhinos first in their division followed by a playoff season that lasted two games. The Rhinos saw off the Pittsburgh Riverhounds 4–0 in first round of the playoffs and then lost 2–1 at home to the Harrisburg City Islanders to finish the season. At the end of the season, head coach Bob Lilley was replaced by Jesse Myers, most recently an assistant coach of the Richmond Kickers.

In January 2013, the Rhinos became the official USL Pro affiliate of the New England Revolution. On May 19, Following a 1–6–1 start to the 2013 season, Myers was dismissed and Pat Ercoli named head coach. They missed the playoffs for the first time ever, finishing with a 6–10–10 record.

The league revoked the Clark family's ownership of the club in January 2016, citing the revocation of the lease on Rochester Rhinos Stadium by the City of Rochester. The league took over operations of the club until it could be sold to a new ownership group. David and Wendy Dworkin, minority owners of the Sacramento Kings basketball team, were identified as the Rhinos' new owners later in the month. The Dworkins were officially announced as the new owners on March 10, 2016.

On November 30, 2017, the Rhinos announced that they would go on hiatus. After almost a year of silence the team announced that it planned to move to the new third division league USL League One and return to the field in 2020. Moreover, the team announced that it had reached a deal with the City to vacate Marina Auto Stadium and stated it would be searching a site to build a new stadium. Towards the end of the first USL League One season, the Rhinos' President Pat Ercoli announced on Uncle Sam's Soccer Podcast that due to delays and pacing of the development of the Rhinos' new stadium that the team would likely sit out the 2020 season and relaunch in 2021.

On November 30, 2017, the team announced that they would not play in 2018 while additional funding was sought. On August 22, 2018, it was announced that the club would pursue a new stadium location and attempt to join USL League One.

In June 2021, Jamie Vardy was announced as co-owner of the franchise and intends to field a team for the 2022 season. Lee Tucker, who was the project leader at Vardy’s successful V9 Academy – which gave opportunities to non-league players in England seeking to break into the professional game, will be appointed Sporting Director.

On September 1, 2021, it was announced that the club had gone through an extensive makeover as part of the club’s rebirth, the Rhinos had a complete rebrand to Rochester New York FC or RNYFC for short, and had a new logo introduced. The new club badge features an abstract rendering of Rochester's High Falls waterfall.

The club returned to play in 2022, and were the only independent club in the new MLS Next Pro league. They made the playoffs but were eliminated in the quarterfinals. On March 10, 2023, Rochester New York FC withdrew from MLS Next Pro and ceased operations citing an "unsustainable business model".